Search by Transcripts

Filter the database for a specific gene or transcript.

Please first specify the species of interest, and indicate whether to include RBPs and motifs inferred from other species, then provide the gene or transcript identification using either Ensembl ID (release 115) or External Gene Name (case insensitive). Please note that External Gene Name may match to multiple Gene IDs if they are found on alternative contigs.

By default, all RBPs are scanned. Alternatively, specify one RBP to scan for its motif(s). Please note that the species specificity flag will be ignored in this case.

Select a treshold for motif matching. The percentile of motif score serves as a homogenized treshold to detect degenerated moifs. A treshold of 99 percentile selects only the highest scored motifs, while a treshold of 50 percentile allows more mismatches while maintaining good correlation with in vitro binding assays. The upper limit of 99 accommodates canonical motifs that permit slight sequence variation at specific positions. Please see our previous publication for more details.