Search by Attributes

Filter the database for specific attributes

Please note: Depending the search criteria, the search can take a few minutes to complete, and the result may contain millions of rows. If the search takes too much time it may be best to download the raw tables and process using Python or R.

Select a combination of attributes to get the details of all transcripts with putative RBP binding site instances observed within these specifications. Please note that not all combinations of choices are compatible.

Select a treshold for motif matching. The percentile of motif score serves as a homogenized treshold to detect degenerated moifs. A treshold of 99 percentile selects only the highest scored motifs, while a treshold of 50 percentile allows more mismatches while maintaining good correlation with in vitro binding assays. The upper limit of 99 accommodates canonical motifs that permit slight sequence variation at specific positions. Please see our previous publication for more details.

Due to potential high row count of the motif instances, the full instance will not be displayed. A download link of the csv is still offered, with the total number of rows to help verifying the completeness of file.